IL_8ZDC_021

3D structure

PDB id

8ZDC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human ubiquitylated pre-40S ribosome with RIOK3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGG*CGAUUC

Length

9 nucleotides

Bulged bases

8ZDC|1|2|U|428

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZDC_021 not in the Motif Atlas

Homologous match to IL_8P9A_393

Geometric discrepancy: 0.2526

The information below is about IL_8P9A_393

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_93336.1

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

4

Unit IDs

8ZDC|1|2|G|411
8ZDC|1|2|G|412
8ZDC|1|2|G|413
*
8ZDC|1|2|C|424
8ZDC|1|2|G|425
8ZDC|1|2|A|426
8ZDC|1|2|U|427
8ZDC|1|2|U|428
8ZDC|1|2|C|429

Current chains

Chain 2

18S rRNA

Nearby chains

Chain E

Small ribosomal subunit protein eS4, X isoform

Chain J

Small ribosomal subunit protein uS4

Chain X

Small ribosomal subunit protein uS12