IL_8ZDC_037
3D structure
- PDB id
- 8ZDC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human ubiquitylated pre-40S ribosome with RIOK3
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CGUAG*UCAAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8ZDC_037 not in the Motif Atlas
- Homologous match to IL_8C3A_428
- Geometric discrepancy: 0.0977
- The information below is about IL_8C3A_428
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_17136.5
- Basepair signature
- cWW-tSH-tHW-tHS-cWW
- Number of instances in this motif group
- 16
Unit IDs
8ZDC|1|2|C|676
8ZDC|1|2|G|677
8ZDC|1|2|U|678
8ZDC|1|2|A|679
8ZDC|1|2|G|680
*
8ZDC|1|2|U|1025
8ZDC|1|2|C|1026
8ZDC|1|2|A|1027
8ZDC|1|2|A|1028
8ZDC|1|2|G|1029
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain L
- Small ribosomal subunit protein uS17
- Chain N
- Small ribosomal subunit protein uS15
- Chain W
- Small ribosomal subunit protein uS8
- Chain X
- Small ribosomal subunit protein uS12
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