IL_8ZDC_039

3D structure

PDB id

8ZDC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human ubiquitylated pre-40S ribosome with RIOK3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AC*GAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZDC_039 not in the Motif Atlas

Homologous match to IL_8C3A_430

Geometric discrepancy: 0.1116

The information below is about IL_8C3A_430

Detailed Annotation

Major groove minor groove platform; mini C-loop

Broad Annotation

No text annotation

Motif group

IL_68140.2

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

19

Unit IDs

8ZDC|1|2|A|802
8ZDC|1|2|C|803
*
8ZDC|1|2|G|860
8ZDC|1|2|A|861
8ZDC|1|2|A|862
8ZDC|1|2|U|863

Current chains

Chain 2

18S rRNA

Nearby chains

Chain H

Small ribosomal subunit protein eS7

Chain L

Small ribosomal subunit protein uS17

Chain W

Small ribosomal subunit protein uS8

Chain X

Small ribosomal subunit protein uS12