IL_8ZDC_040

3D structure

PDB id

8ZDC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human ubiquitylated pre-40S ribosome with RIOK3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UUG*CUA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZDC_040 not in the Motif Atlas

Homologous match to IL_8C3A_431

Geometric discrepancy: 0.2458

The information below is about IL_8C3A_431

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_10289.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

237

Unit IDs

8ZDC|1|2|U|805
8ZDC|1|2|U|806
8ZDC|1|2|G|807
*
8ZDC|1|2|C|856
8ZDC|1|2|U|857
8ZDC|1|2|A|858

Current chains

Chain 2

18S rRNA

Nearby chains

Chain E

Small ribosomal subunit protein eS4, X isoform

Chain H

Small ribosomal subunit protein eS7

Chain L

Small ribosomal subunit protein uS17

Chain W

Small ribosomal subunit protein uS8