IL_8ZDC_053

3D structure

PDB id

8ZDC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human ubiquitylated pre-40S ribosome with RIOK3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGAU*GCAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZDC_053 not in the Motif Atlas

Homologous match to IL_8P9A_426

Geometric discrepancy: 0.1706

The information below is about IL_8P9A_426

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

8ZDC|1|2|C|1098
8ZDC|1|2|G|1099
8ZDC|1|2|A|1100
8ZDC|1|2|U|1101
*
8ZDC|1|2|G|1131
8ZDC|1|2|C|1132
8ZDC|1|2|A|1133
8ZDC|1|2|G|1134

Current chains

Chain 2

18S rRNA

Nearby chains

Chain A

Small ribosomal subunit protein uS2

Chain B

Small ribosomal subunit protein eS1

Chain N

Small ribosomal subunit protein uS15

Chain b

Small ribosomal subunit protein eS27

Chain y

RNA-binding protein NOB1