IL_8ZDC_073

3D structure

PDB id

8ZDC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human ubiquitylated pre-40S ribosome with RIOK3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

ACUA*UUCU

Length

8 nucleotides

Bulged bases

8ZDC|1|2|C|1403, 8ZDC|1|2|U|1404

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZDC_073 not in the Motif Atlas

Homologous match to IL_8C3A_462

Geometric discrepancy: 0.2216

The information below is about IL_8C3A_462

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_25234.1

Basepair signature

cWW-cSH-L-cWW

Number of instances in this motif group

2

Unit IDs

8ZDC|1|2|A|1402
8ZDC|1|2|C|1403
8ZDC|1|2|U|1404
8ZDC|1|2|A|1405
*
8ZDC|1|2|U|1441
8ZDC|1|2|U|1442
8ZDC|1|2|C|1443
8ZDC|1|2|U|1444

Current chains

Chain 2

18S rRNA

Nearby chains

Chain Q

Small ribosomal subunit protein uS9

Chain U

Small ribosomal subunit protein uS10

Chain g

Small ribosomal subunit protein RACK1