IL_8ZDC_081

3D structure

PDB id

8ZDC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human ubiquitylated pre-40S ribosome with RIOK3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UAC*GAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZDC_081 not in the Motif Atlas

Homologous match to IL_8P9A_456

Geometric discrepancy: 0.2324

The information below is about IL_8P9A_456

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

174

Unit IDs

8ZDC|1|2|U|1714
8ZDC|1|2|A|1715
8ZDC|1|2|C|1716
*
8ZDC|1|2|G|1817
8ZDC|1|2|A|1818
8ZDC|1|2|A|1819

Current chains

Chain 2

18S rRNA

Nearby chains

Chain X

Small ribosomal subunit protein uS12

Chain t

Protein LTV1 homolog

Chain u

Pre-rRNA-processing protein TSR1 homolog