IL_8ZDC_087

3D structure

PDB id

8ZDC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human ubiquitylated pre-40S ribosome with RIOK3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGGAU*AGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZDC_087 not in the Motif Atlas

Homologous match to IL_8C3A_480

Geometric discrepancy: 0.1733

The information below is about IL_8C3A_480

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_50730.1

Basepair signature

cWW-tSH-tSH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

8ZDC|1|2|C|1742
8ZDC|1|2|G|1743
8ZDC|1|2|G|1744
8ZDC|1|2|A|1745
8ZDC|1|2|U|1746
*
8ZDC|1|2|A|1788
8ZDC|1|2|G|1789
8ZDC|1|2|A|1790
8ZDC|1|2|A|1791
8ZDC|1|2|G|1792

Current chains

Chain 2

18S rRNA

Nearby chains

Chain G

Small ribosomal subunit protein eS6

Chain I

Small ribosomal subunit protein eS8