IL_8ZDD_049

3D structure

PDB id

8ZDD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human ubiquitylated pre-40S ribosome with RIOK3 (without NOB1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GCUAG*CUUGGACC

Length

13 nucleotides

Bulged bases

8ZDD|1|2|G|970

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZDD_049 not in the Motif Atlas

Geometric match to IL_5J7L_035

Geometric discrepancy: 0.278

The information below is about IL_5J7L_035

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_01488.3

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

10

Unit IDs

8ZDD|1|2|G|952
8ZDD|1|2|C|953
8ZDD|1|2|U|954
8ZDD|1|2|A|955
8ZDD|1|2|G|956
*
8ZDD|1|2|C|967
8ZDD|1|2|U|968
8ZDD|1|2|U|969
8ZDD|1|2|G|970
8ZDD|1|2|G|971
8ZDD|1|2|A|972
8ZDD|1|2|C|973
8ZDD|1|2|C|974

Current chains

Chain 2

18S rRNA

Nearby chains

Chain B

Small ribosomal subunit protein eS1

Chain O

Small ribosomal subunit protein uS11