IL_8ZDD_056

3D structure

PDB id

8ZDD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human ubiquitylated pre-40S ribosome with RIOK3 (without NOB1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGAGUAUG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZDD_056 not in the Motif Atlas

Homologous match to IL_8C3A_446

Geometric discrepancy: 0.0866

The information below is about IL_8C3A_446

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

5

Unit IDs

8ZDD|1|2|G|1168
8ZDD|1|2|G|1169
8ZDD|1|2|A|1170
8ZDD|1|2|G|1171
8ZDD|1|2|U|1172
8ZDD|1|2|A|1173
8ZDD|1|2|U|1174
8ZDD|1|2|G|1175
*
8ZDD|1|2|U|1186
8ZDD|1|2|G|1187
8ZDD|1|2|A|1188
8ZDD|1|2|A|1189
8ZDD|1|2|A|1190
8ZDD|1|2|C|1191

Current chains

Chain 2

18S rRNA

Nearby chains

Chain X

Small ribosomal subunit protein uS12

Chain t

Protein LTV1 homolog