IL_8ZDD_070

3D structure

PDB id

8ZDD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human ubiquitylated pre-40S ribosome with RIOK3 (without NOB1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CAUGC*GAGG

Length

9 nucleotides

Bulged bases

8ZDD|1|2|U|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZDD_070 not in the Motif Atlas

Geometric match to IL_5EW4_002

Geometric discrepancy: 0.337

The information below is about IL_5EW4_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

8ZDD|1|2|C|1395
8ZDD|1|2|A|1396
8ZDD|1|2|U|1397
8ZDD|1|2|G|1398
8ZDD|1|2|C|1399
*
8ZDD|1|2|G|1447
8ZDD|1|2|A|1448
8ZDD|1|2|G|1449
8ZDD|1|2|G|1450

Current chains

Chain 2

18S rRNA

Nearby chains

Chain Q

Small ribosomal subunit protein uS9

Chain R

Small ribosomal subunit protein eS17

Chain U

Small ribosomal subunit protein uS10

Chain g

Small ribosomal subunit protein RACK1