IL_8ZEJ_011

3D structure

PDB id

8ZEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

8ZEJ|1|A|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZEJ_011 not in the Motif Atlas

Geometric match to IL_5J7L_012

Geometric discrepancy: 0.1446

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

8ZEJ|1|A|G|147
8ZEJ|1|A|G|148
8ZEJ|1|A|A|149
8ZEJ|1|A|U|150
8ZEJ|1|A|A|151
8ZEJ|1|A|A|152
8ZEJ|1|A|C|153
*
8ZEJ|1|A|G|168
8ZEJ|1|A|C|169
8ZEJ|1|A|U|170
8ZEJ|1|A|A|171
8ZEJ|1|A|A|172
8ZEJ|1|A|U|173
8ZEJ|1|A|A|174
8ZEJ|1|A|C|175

Current chains

Chain A

16S rRNA

Nearby chains

Chain T

30S ribosomal protein S20