IL_8ZEJ_023

3D structure

PDB id

8ZEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69 Å

Loop

Sequence

CGUAAAG*CG

Length

9 nucleotides

Bulged bases

8ZEJ|1|A|A|572

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZEJ_023 not in the Motif Atlas

Geometric match to IL_4LFB_022

Geometric discrepancy: 0.109

The information below is about IL_4LFB_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_20847.1

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

5

Unit IDs

8ZEJ|1|A|C|569
8ZEJ|1|A|G|570
8ZEJ|1|A|U|571
8ZEJ|1|A|A|572
8ZEJ|1|A|A|573
8ZEJ|1|A|A|574
8ZEJ|1|A|G|575
*
8ZEJ|1|A|C|880
8ZEJ|1|A|G|881

Current chains

Chain A

16S rRNA

Nearby chains

Chain L

Small ribosomal subunit protein uS12

Chain Q

30S ribosomal protein S17