IL_8ZEJ_077

3D structure

PDB id

8ZEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69 Å

Loop

Sequence

CCAGUAG*CGAACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZEJ_077 not in the Motif Atlas

Geometric match to IL_5J7L_251

Geometric discrepancy: 0.0954

The information below is about IL_5J7L_251

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_26307.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

8ZEJ|1|b|C|239
8ZEJ|1|b|C|240
8ZEJ|1|b|A|241
8ZEJ|1|b|G|242
8ZEJ|1|b|U|243
8ZEJ|1|b|A|244
8ZEJ|1|b|G|245
*
8ZEJ|1|b|C|253
8ZEJ|1|b|G|254
8ZEJ|1|b|A|255
8ZEJ|1|b|A|256
8ZEJ|1|b|C|257
8ZEJ|1|b|G|258

Current chains

Chain b

23S rRNA

Nearby chains

Chain 7

50S ribosomal protein L35

Chain m

50S ribosomal protein L15