IL_8ZEJ_110

3D structure

PDB id

8ZEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69 Å

Loop

Sequence

CUGCGAAG*UGGAG

Length

13 nucleotides

Bulged bases

8ZEJ|1|b|C|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZEJ_110 not in the Motif Atlas

Geometric match to IL_5J7L_288

Geometric discrepancy: 0.1387

The information below is about IL_5J7L_288

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

8ZEJ|1|b|C|1208
8ZEJ|1|b|U|1209
8ZEJ|1|b|G|1210
8ZEJ|1|b|C|1211
8ZEJ|1|b|G|1212
8ZEJ|1|b|A|1213
8ZEJ|1|b|A|1214
8ZEJ|1|b|G|1215
*
8ZEJ|1|b|U|1234
8ZEJ|1|b|G|1235
8ZEJ|1|b|G|1236
8ZEJ|1|b|A|1237
8ZEJ|1|b|G|1238

Current chains

Chain b

23S rRNA

Nearby chains

Chain r

50S ribosomal protein L20