IL_8ZEJ_119

3D structure

PDB id

8ZEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69 Å

Loop

Sequence

GAAG*CCUGC

Length

9 nucleotides

Bulged bases

8ZEJ|1|b|A|1434, 8ZEJ|1|b|U|1559

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZEJ_119 not in the Motif Atlas

Geometric match to IL_4PMI_008

Geometric discrepancy: 0.3903

The information below is about IL_4PMI_008

Detailed Annotation

tWW and non-canonical cWW

Broad Annotation

tWW and non-canonical cWW

Motif group

IL_28284.1

Basepair signature

cWW-cWW-tWW-cWW

Number of instances in this motif group

3

Unit IDs

8ZEJ|1|b|G|1432
8ZEJ|1|b|A|1433
8ZEJ|1|b|A|1434
8ZEJ|1|b|G|1435
*
8ZEJ|1|b|C|1557
8ZEJ|1|b|C|1558
8ZEJ|1|b|U|1559
8ZEJ|1|b|G|1560
8ZEJ|1|b|C|1561

Current chains

Chain b

23S rRNA

Nearby chains

Chain c

50S ribosomal protein L2