IL_8ZEJ_142

3D structure

PDB id

8ZEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZEJ_142 not in the Motif Atlas

Geometric match to IL_5J7L_387

Geometric discrepancy: 0.1218

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

8ZEJ|1|b|U|1851
8ZEJ|1|b|U|1852
8ZEJ|1|b|A|1853
8ZEJ|1|b|A|1854
8ZEJ|1|b|U|1855
8ZEJ|1|b|U|1856
8ZEJ|1|b|G|1857
8ZEJ|1|b|A|1858
8ZEJ|1|b|U|1859
8ZEJ|1|b|G|1860
*
8ZEJ|1|b|U|1882
8ZEJ|1|b|U|1883
8ZEJ|1|b|G|1884
8ZEJ|1|b|A|1885
8ZEJ|1|b|U|1886
8ZEJ|1|b|C|1887
8ZEJ|1|b|G|1888
8ZEJ|1|b|A|1889
8ZEJ|1|b|A|1890
8ZEJ|1|b|G|1891

Current chains

Chain b

23S rRNA

Nearby chains

Chain X

Transfer RNA; tRNA