IL_8ZFF_034

3D structure

PDB id

8ZFF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome without hypoxia-induced rRNA modifications

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

UGUAG*CGUAGAGA

Length

13 nucleotides

Bulged bases

8ZFF|1|A|A|702

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZFF_034 not in the Motif Atlas

Geometric match to IL_8B0X_034

Geometric discrepancy: 0.0697

The information below is about IL_8B0X_034

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_71972.1

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

11

Unit IDs

8ZFF|1|A|U|684
8ZFF|1|A|G|685
8ZFF|1|A|U|686
8ZFF|1|A|A|687
8ZFF|1|A|G|688
*
8ZFF|1|A|C|699
8ZFF|1|A|G|700
8ZFF|1|A|U|701
8ZFF|1|A|A|702
8ZFF|1|A|G|703
8ZFF|1|A|A|704
8ZFF|1|A|G|705
8ZFF|1|A|A|706

Current chains

Chain A

16S rRNA

Nearby chains

Chain K

Small ribosomal subunit protein uS11

Chain a

Large subunit ribosomal RNA; LSU rRNA