IL_8ZFF_128
3D structure
- PDB id
- 8ZFF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Bacterial Ribosome without hypoxia-induced rRNA modifications
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.59 Å
Loop
- Sequence
- CGUAAC*GGAGAAG
- Length
- 13 nucleotides
- Bulged bases
- 8ZFF|1|a|G|1699
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8ZFF_128 not in the Motif Atlas
- Homologous match to IL_7A0S_063
- Geometric discrepancy: 0.1022
- The information below is about IL_7A0S_063
- Detailed Annotation
- tSH-tSH-tHH-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_20700.1
- Basepair signature
- cWW-tSH-L-R-tHH-tHS-cWW
- Number of instances in this motif group
- 10
Unit IDs
8ZFF|1|a|C|1686
8ZFF|1|a|G|1687
8ZFF|1|a|U|1688
8ZFF|1|a|A|1689
8ZFF|1|a|A|1690
8ZFF|1|a|C|1691
*
8ZFF|1|a|G|1696
8ZFF|1|a|G|1697
8ZFF|1|a|A|1698
8ZFF|1|a|G|1699
8ZFF|1|a|A|1700
8ZFF|1|a|A|1701
8ZFF|1|a|G|1702
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain c
- Large ribosomal subunit protein uL2
Coloring options: