IL_8ZFG_068

3D structure

PDB id

8ZFG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with hypoxia-induced rRNA modifications

Experimental method

ELECTRON MICROSCOPY

Resolution

2.68 Å

Loop

Sequence

GUAAG*CGUUAUAAC

Length

14 nucleotides

Bulged bases

8ZFG|1|a|U|102

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZFG_068 not in the Motif Atlas

Homologous match to IL_7A0S_004

Geometric discrepancy: 0.4359

The information below is about IL_7A0S_004

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_94910.1

Basepair signature

cWW-tSS-tSH-L-R-R-L-cWW-L

Number of instances in this motif group

3

Unit IDs

8ZFG|1|a|G|81
8ZFG|1|a|U|82
8ZFG|1|a|A|83
8ZFG|1|a|A|84
8ZFG|1|a|G|85
*
8ZFG|1|a|C|97
8ZFG|1|a|G|98
8ZFG|1|a|U|99
8ZFG|1|a|U|100
8ZFG|1|a|A|101
8ZFG|1|a|U|102
8ZFG|1|a|A|103
8ZFG|1|a|A|104
8ZFG|1|a|C|105

Current chains

Chain a

23S rRNA

Nearby chains

Chain t

Large ribosomal subunit protein uL24

Chain x

Large ribosomal subunit protein uL29