IL_8ZFG_087

3D structure

PDB id

8ZFG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with hypoxia-induced rRNA modifications

Experimental method

ELECTRON MICROSCOPY

Resolution

2.68 Å

Loop

Sequence

AAUUC*GUUAU

Length

10 nucleotides

Bulged bases

8ZFG|1|a|U|846, 8ZFG|1|a|U|931

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZFG_087 not in the Motif Atlas

Geometric match to IL_8B0X_179

Geometric discrepancy: 0.1273

The information below is about IL_8B0X_179

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_01742.1

Basepair signature

cWW-L-cWW-R-cWW

Number of instances in this motif group

3

Unit IDs

8ZFG|1|a|A|844
8ZFG|1|a|A|845
8ZFG|1|a|U|846
8ZFG|1|a|U|847
8ZFG|1|a|C|848
*
8ZFG|1|a|G|930
8ZFG|1|a|U|931
8ZFG|1|a|U|932
8ZFG|1|a|A|933
8ZFG|1|a|U|934

Current chains

Chain a

23S rRNA

Nearby chains

Chain y

Large ribosomal subunit protein uL30