IL_8ZFG_115

3D structure

PDB id

8ZFG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with hypoxia-induced rRNA modifications

Experimental method

ELECTRON MICROSCOPY

Resolution

2.68 Å

Loop

Sequence

GAAG*CCUGC

Length

9 nucleotides

Bulged bases

8ZFG|1|a|U|1559

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZFG_115 not in the Motif Atlas

Geometric match to IL_8B0X_115

Geometric discrepancy: 0.0665

The information below is about IL_8B0X_115

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28284.1

Basepair signature

cWW-cWW-tWW-cWW

Number of instances in this motif group

3

Unit IDs

8ZFG|1|a|G|1432
8ZFG|1|a|A|1433
8ZFG|1|a|A|1434
8ZFG|1|a|G|1435
*
8ZFG|1|a|C|1557
8ZFG|1|a|C|1558
8ZFG|1|a|U|1559
8ZFG|1|a|G|1560
8ZFG|1|a|C|1561

Current chains

Chain a

23S rRNA

Nearby chains

Chain c

Large ribosomal subunit protein uL2