IL_8ZFG_163

3D structure

PDB id

8ZFG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with hypoxia-induced rRNA modifications

Experimental method

ELECTRON MICROSCOPY

Resolution

2.68 Å

Loop

Sequence

UGUUC*GGUAG

Length

10 nucleotides

Bulged bases

8ZFG|1|a|U|2689, 8ZFG|1|a|U|2690

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZFG_163 not in the Motif Atlas

Homologous match to IL_7A0S_096

Geometric discrepancy: 0.1722

The information below is about IL_7A0S_096

Detailed Annotation

UAA/GAN related, with intercalation

Broad Annotation

UAA/GAN related, with intercalation

Motif group

IL_82016.1

Basepair signature

cWW-L-tHS-L-cWW

Number of instances in this motif group

4

Unit IDs

8ZFG|1|a|U|2687
8ZFG|1|a|G|2688
8ZFG|1|a|U|2689
8ZFG|1|a|U|2690
8ZFG|1|a|C|2691
*
8ZFG|1|a|G|2718
8ZFG|1|a|G|2719
8ZFG|1|a|U|2720
8ZFG|1|a|A|2721
8ZFG|1|a|G|2722

Current chains

Chain a

23S rRNA

Nearby chains

Chain d

Large ribosomal subunit protein uL3

Chain m

Large ribosomal subunit protein bL17

Chain o

Large ribosomal subunit protein bL19