IL_8ZFI_030
3D structure
- PDB id
- 8ZFI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UGAAAUCC*GAACUG
- Length
- 14 nucleotides
- Bulged bases
- 8ZFI|1|A|U|632
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8ZFI_030 not in the Motif Atlas
- Geometric match to IL_5J7L_030
- Geometric discrepancy: 0.198
- The information below is about IL_5J7L_030
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_78349.3
- Basepair signature
- cWW-L-R-L-R-L-R-L-cWW-L-L
- Number of instances in this motif group
- 2
Unit IDs
8ZFI|1|A|U|605
8ZFI|1|A|G|606
8ZFI|1|A|A|607
8ZFI|1|A|A|608
8ZFI|1|A|A|609
8ZFI|1|A|U|610
8ZFI|1|A|C|611
8ZFI|1|A|C|612
*
8ZFI|1|A|G|628
8ZFI|1|A|A|629
8ZFI|1|A|A|630
8ZFI|1|A|C|631
8ZFI|1|A|U|632
8ZFI|1|A|G|633
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain D
- 30S ribosomal protein S4
- Chain H
- 30S ribosomal protein S8
- Chain P
- 30S ribosomal protein S16
Coloring options: