IL_8ZFI_046

3D structure

PDB id

8ZFI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGCAUG*CAUG

Length

10 nucleotides

Bulged bases

8ZFI|1|A|C|1054

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8ZFI|1|A|U|1052
8ZFI|1|A|G|1053
8ZFI|1|A|C|1054
8ZFI|1|A|A|1055
8ZFI|1|A|U|1056
8ZFI|1|A|G|1057
*
8ZFI|1|A|C|1203
8ZFI|1|A|A|1204
8ZFI|1|A|U|1205
8ZFI|1|A|G|1206

Current chains

Chain A

16S rRNA

Nearby chains

Chain C

30S ribosomal protein S3

Chain J

30S ribosomal protein S10

Chain N

30S ribosomal protein S14

Chain Z

Transfer RNA; tRNA

Chain x

mRNA