IL_8ZFI_047
3D structure
- PDB id
- 8ZFI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UGCAUGG*UCAUCAUG
- Length
- 15 nucleotides
- Bulged bases
- 8ZFI|1|A|C|1054, 8ZFI|1|A|A|1201
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8ZFI_047 not in the Motif Atlas
- Geometric match to IL_8P9A_439
- Geometric discrepancy: 0.2349
- The information below is about IL_8P9A_439
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_99893.1
- Basepair signature
- cWW-tHS-tWH-cWH-cWW-L-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
8ZFI|1|A|U|1052
8ZFI|1|A|G|1053
8ZFI|1|A|C|1054
8ZFI|1|A|A|1055
8ZFI|1|A|U|1056
8ZFI|1|A|G|1057
8ZFI|1|A|G|1058
*
8ZFI|1|A|U|1199
8ZFI|1|A|C|1200
8ZFI|1|A|A|1201
8ZFI|1|A|U|1202
8ZFI|1|A|C|1203
8ZFI|1|A|A|1204
8ZFI|1|A|U|1205
8ZFI|1|A|G|1206
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain C
- 30S ribosomal protein S3
- Chain J
- 30S ribosomal protein S10
- Chain N
- 30S ribosomal protein S14
- Chain Z
- Transfer RNA; tRNA
- Chain x
- mRNA
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