IL_8ZFI_103

3D structure

PDB id

8ZFI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCA*UG

Length

5 nucleotides

Bulged bases

8ZFI|1|b|C|995

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZFI_103 not in the Motif Atlas

Geometric match to IL_5J7L_276

Geometric discrepancy: 0.0937

The information below is about IL_5J7L_276

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.15

Basepair signature

cWW-L-cWW

Number of instances in this motif group

41

Unit IDs

8ZFI|1|b|C|994
8ZFI|1|b|C|995
8ZFI|1|b|A|996
*
8ZFI|1|b|U|1159
8ZFI|1|b|G|1160

Current chains

Chain b

RNA (2903-MER)

Nearby chains

Chain 2

50S ribosomal protein L30

Chain k

50S ribosomal protein L13

Chain r

50S ribosomal protein L20

Chain s

50S ribosomal protein L21