IL_8ZFI_110
3D structure
- PDB id
- 8ZFI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GAAG*CGGC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8ZFI_110 not in the Motif Atlas
- Geometric match to IL_8P9A_327
- Geometric discrepancy: 0.1672
- The information below is about IL_8P9A_327
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.1
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 33
Unit IDs
8ZFI|1|b|G|1038
8ZFI|1|b|A|1039
8ZFI|1|b|A|1040
8ZFI|1|b|G|1041
*
8ZFI|1|b|C|1114
8ZFI|1|b|G|1115
8ZFI|1|b|G|1116
8ZFI|1|b|C|1117
Current chains
- Chain b
- RNA (2903-MER)
Nearby chains
- Chain g
- 50S ribosomal protein L6
- Chain n
- 50S ribosomal protein L16
- Chain w
- 50S ribosomal protein L25
Coloring options: