IL_8ZGR_015

3D structure

PDB id

8ZGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with A/A tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UUG*UCAA

Length

7 nucleotides

Bulged bases

8ZGR|1|LA|U|414, 8ZGR|1|LC|A|9

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZGR_015 not in the Motif Atlas

Geometric match to IL_2ET8_001

Geometric discrepancy: 0.2312

The information below is about IL_2ET8_001

Detailed Annotation

Stack and bulge

Broad Annotation

Stack and bulge

Motif group

IL_61702.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

6

Unit IDs

8ZGR|1|LA|U|413
8ZGR|1|LA|U|414
8ZGR|1|LA|G|415
*
8ZGR|1|LC|U|7
8ZGR|1|LC|C|8
8ZGR|1|LC|A|9
8ZGR|1|LC|A|10

Current chains

Chain LA

25S rRNA (3393-MER)

Chain LC

5.8S rRNA (158-MER)

Nearby chains

Chain LR

Large ribosomal subunit protein uL22A

Chain Lg

Large ribosomal subunit protein eL32