IL_8ZGR_020

3D structure

PDB id

8ZGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with A/A tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GAAUGUAG*UAUUAUAGC

Length

17 nucleotides

Bulged bases

8ZGR|1|LA|U|533, 8ZGR|1|LA|U|557

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZGR_020 not in the Motif Atlas

Homologous match to IL_8CRE_022

Geometric discrepancy: 0.1385

The information below is about IL_8CRE_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_43858.1

Basepair signature

cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8ZGR|1|LA|G|530
8ZGR|1|LA|A|531
8ZGR|1|LA|A|532
8ZGR|1|LA|U|533
8ZGR|1|LA|G|534
8ZGR|1|LA|U|535
8ZGR|1|LA|A|536
8ZGR|1|LA|G|537
*
8ZGR|1|LA|U|552
8ZGR|1|LA|A|553
8ZGR|1|LA|U|554
8ZGR|1|LA|U|555
8ZGR|1|LA|A|556
8ZGR|1|LA|U|557
8ZGR|1|LA|A|558
8ZGR|1|LA|G|559
8ZGR|1|LA|C|560

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LO

Large ribosomal subunit protein eL14A

Chain LU

Large ribosomal subunit protein eL20A