IL_8ZGR_047

3D structure

PDB id

8ZGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with A/A tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CAUU*ACUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZGR_047 not in the Motif Atlas

Geometric match to IL_1L9A_005

Geometric discrepancy: 0.218

The information below is about IL_1L9A_005

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

8ZGR|1|LA|C|1118
8ZGR|1|LA|A|1119
8ZGR|1|LA|U|1120
8ZGR|1|LA|U|1121
*
8ZGR|1|LA|A|1135
8ZGR|1|LA|C|1136
8ZGR|1|LA|U|1137
8ZGR|1|LA|G|1138

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LB

5S ribosomal RNA; 5S rRNA

Chain LI

Large ribosomal subunit protein uL30A

Chain Ld

Large ribosomal subunit protein eL29