IL_8ZGR_110

3D structure

PDB id

8ZGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with A/A tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUC*GUGAG

Length

8 nucleotides

Bulged bases

8ZGR|1|LA|G|2944, 8ZGR|1|LA|A|2945

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZGR_110 not in the Motif Atlas

Homologous match to IL_8CRE_116

Geometric discrepancy: 0.0541

The information below is about IL_8CRE_116

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

8ZGR|1|LA|C|2878
8ZGR|1|LA|U|2879
8ZGR|1|LA|C|2880
*
8ZGR|1|LA|G|2942
8ZGR|1|LA|U|2943
8ZGR|1|LA|G|2944
8ZGR|1|LA|A|2945
8ZGR|1|LA|G|2946

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LE

Large ribosomal subunit protein uL3

Chain LX

Large ribosomal subunit protein uL14A