IL_8ZGR_116

3D structure

PDB id

8ZGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with A/A tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

8ZGR|1|LA|A|2970

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZGR_116 not in the Motif Atlas

Geometric match to IL_2VPL_002

Geometric discrepancy: 0.2777

The information below is about IL_2VPL_002

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

134

Unit IDs

8ZGR|1|LA|C|2959
8ZGR|1|LA|G|2960
*
8ZGR|1|LA|C|2969
8ZGR|1|LA|A|2970
8ZGR|1|LA|G|2971

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LD

Large ribosomal subunit protein uL2A

Chain LL

Large ribosomal subunit protein uL16

Chain Ta

Transfer RNA; tRNA