IL_8ZGR_123
3D structure
- PDB id
- 8ZGR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with A/A tRNA and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- AUUAU*AGAAU
- Length
- 10 nucleotides
- Bulged bases
- 8ZGR|1|LA|A|3129
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8ZGR_123 not in the Motif Atlas
- Homologous match to IL_8CRE_129
- Geometric discrepancy: 0.0648
- The information below is about IL_8CRE_129
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- No text annotation
- Motif group
- IL_38507.2
- Basepair signature
- cWW-tWH-L-tHS-cWW
- Number of instances in this motif group
- 16
Unit IDs
8ZGR|1|LA|A|3102
8ZGR|1|LA|U|3103
8ZGR|1|LA|U|3104
8ZGR|1|LA|A|3105
8ZGR|1|LA|U|3106
*
8ZGR|1|LA|A|3126
8ZGR|1|LA|G|3127
8ZGR|1|LA|A|3128
8ZGR|1|LA|A|3129
8ZGR|1|LA|U|3130
Current chains
- Chain LA
- 25S rRNA (3393-MER)
Nearby chains
- Chain LK
- Large ribosomal subunit protein uL6A
- Chain LQ
- Large ribosomal subunit protein uL13A
- Chain Lo
- Large ribosomal subunit protein eL40A
Coloring options: