IL_8ZGR_154

3D structure

PDB id

8ZGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with A/A tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GUUA*UUUC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZGR_154 not in the Motif Atlas

Geometric match to IL_8P9A_380

Geometric discrepancy: 0.1128

The information below is about IL_8P9A_380

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

29

Unit IDs

8ZGR|1|S2|G|109
8ZGR|1|S2|U|110
8ZGR|1|S2|U|111
8ZGR|1|S2|A|112
*
8ZGR|1|S2|U|302
8ZGR|1|S2|U|303
8ZGR|1|S2|U|304
8ZGR|1|S2|C|305

Current chains

Chain S2

chain 2 18S rRNA (1800-MER)

Nearby chains

Chain SS

Small ribosomal subunit protein eS4A

Chain SV

Small ribosomal subunit protein eS8A

Chain SX

Small ribosomal subunit protein uS17A