IL_8ZGR_157

3D structure

PDB id

8ZGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with A/A tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UAUAAC*GCUAAUA

Length

13 nucleotides

Bulged bases

8ZGR|1|S2|U|146, 8ZGR|1|S2|U|170

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8ZGR|1|S2|U|144
8ZGR|1|S2|A|145
8ZGR|1|S2|U|146
8ZGR|1|S2|A|147
8ZGR|1|S2|A|148
8ZGR|1|S2|C|149
*
8ZGR|1|S2|G|165
8ZGR|1|S2|C|166
8ZGR|1|S2|U|167
8ZGR|1|S2|A|168
8ZGR|1|S2|A|169
8ZGR|1|S2|U|170
8ZGR|1|S2|A|171

Current chains

Chain S2

chain 2 18S rRNA (1800-MER)

Nearby chains

Chain ST

Small ribosomal subunit protein eS6A

Chain Sd

Small ribosomal subunit protein eS24A