IL_8ZGR_163
3D structure
- PDB id
- 8ZGR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with A/A tRNA and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UAUCAA*UUUCAACG
- Length
- 14 nucleotides
- Bulged bases
- 8ZGR|1|S2|U|313, 8ZGR|1|S2|C|351
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8ZGR_163 not in the Motif Atlas
- Geometric match to IL_8CRE_408
- Geometric discrepancy: 0.0736
- The information below is about IL_8CRE_408
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_46174.4
- Basepair signature
- cWW-cSS-tSS-tSH-L-cWW-tHW-cWW
- Number of instances in this motif group
- 6
Unit IDs
8ZGR|1|S2|U|311
8ZGR|1|S2|A|312
8ZGR|1|S2|U|313
8ZGR|1|S2|C|314
8ZGR|1|S2|A|315
8ZGR|1|S2|A|316
*
8ZGR|1|S2|U|348
8ZGR|1|S2|U|349
8ZGR|1|S2|U|350
8ZGR|1|S2|C|351
8ZGR|1|S2|A|352
8ZGR|1|S2|A|353
8ZGR|1|S2|C|354
8ZGR|1|S2|G|355
Current chains
- Chain S2
- chain 2 18S rRNA (1800-MER)
Nearby chains
- Chain SV
- Small ribosomal subunit protein eS8A
- Chain SX
- Small ribosomal subunit protein uS17A
- Chain Sc
- Small ribosomal subunit protein uS12A
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