IL_8ZGR_224

3D structure

PDB id

8ZGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with A/A tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UAC*GAA

Length

6 nucleotides

Bulged bases

8ZGR|1|S2|A|1749

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZGR_224 not in the Motif Atlas

Geometric match to IL_2GUN_002

Geometric discrepancy: 0.2696

The information below is about IL_2GUN_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_53541.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

8ZGR|1|S2|U|1650
8ZGR|1|S2|A|1651
8ZGR|1|S2|C|1652
*
8ZGR|1|S2|G|1748
8ZGR|1|S2|A|1749
8ZGR|1|S2|A|1750

Current chains

Chain S2

chain 2 18S rRNA (1800-MER)

Nearby chains

Chain LA

Large subunit ribosomal RNA; LSU rRNA

Chain Lp

Large ribosomal subunit protein eL41A

Chain Sc

Small ribosomal subunit protein uS12A