3D structure

PDB id
8ZGY (explore in PDB, NAKB, or RNA 3D Hub)
Description
80S ribosome with P/E tRNA and mRNA of WNV
Experimental method
ELECTRON MICROSCOPY
Resolution
2.8 Å

Loop

Sequence
GAAUGUAG*UAUUAUAGC
Length
17 nucleotides
Bulged bases
8ZGY|1|LA|U|533, 8ZGY|1|LA|U|557
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8ZGY_018 not in the Motif Atlas
Homologous match to IL_8CRE_022
Geometric discrepancy: 0.1088
The information below is about IL_8CRE_022
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_43858.1
Basepair signature
cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW
Number of instances in this motif group
2

Unit IDs

8ZGY|1|LA|G|530
8ZGY|1|LA|A|531
8ZGY|1|LA|A|532
8ZGY|1|LA|U|533
8ZGY|1|LA|G|534
8ZGY|1|LA|U|535
8ZGY|1|LA|A|536
8ZGY|1|LA|G|537
*
8ZGY|1|LA|U|552
8ZGY|1|LA|A|553
8ZGY|1|LA|U|554
8ZGY|1|LA|U|555
8ZGY|1|LA|A|556
8ZGY|1|LA|U|557
8ZGY|1|LA|A|558
8ZGY|1|LA|G|559
8ZGY|1|LA|C|560

Current chains

Chain LA
25S rRNA (3393-MER)

Nearby chains

Chain LO
Large ribosomal subunit protein eL14A
Chain LU
Large ribosomal subunit protein eL20A

Coloring options:


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