IL_8ZGY_024

3D structure

PDB id

8ZGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CUGAUG*CGGAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZGY_024 not in the Motif Atlas

Homologous match to IL_8CRE_028

Geometric discrepancy: 0.0774

The information below is about IL_8CRE_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85536.2

Basepair signature

cWW-tSH-L-R-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

8ZGY|1|LA|C|757
8ZGY|1|LA|U|758
8ZGY|1|LA|G|759
8ZGY|1|LA|A|760
8ZGY|1|LA|U|761
8ZGY|1|LA|G|762
*
8ZGY|1|LA|C|767
8ZGY|1|LA|G|768
8ZGY|1|LA|G|769
8ZGY|1|LA|A|770
8ZGY|1|LA|U|771
8ZGY|1|LA|G|772

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LN

Large ribosomal subunit protein eL13A

Chain Lc

Large ribosomal subunit protein uL15

Chain Lq

Large ribosomal subunit protein eL42A