IL_8ZGY_028

3D structure

PDB id

8ZGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZGY_028 not in the Motif Atlas

Homologous match to IL_8CRE_033

Geometric discrepancy: 0.0716

The information below is about IL_8CRE_033

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_50730.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

19

Unit IDs

8ZGY|1|LA|U|833
8ZGY|1|LA|G|834
8ZGY|1|LA|A|835
8ZGY|1|LA|A|836
8ZGY|1|LA|G|837
*
8ZGY|1|LA|U|854
8ZGY|1|LA|G|855
8ZGY|1|LA|G|856
8ZGY|1|LA|A|857
8ZGY|1|LA|G|858

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LD

Large ribosomal subunit protein uL2A

Chain LT

Large ribosomal subunit protein eL19A

Chain Lr

Large ribosomal subunit protein eL43A