IL_8ZGY_039

3D structure

PDB id

8ZGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

AUUAGA*UAUUCU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8ZGY|1|LA|A|1005
8ZGY|1|LA|U|1006
8ZGY|1|LA|U|1007
8ZGY|1|LA|A|1008
8ZGY|1|LA|G|1009
8ZGY|1|LA|A|1010
*
8ZGY|1|LA|U|1038
8ZGY|1|LA|A|1039
8ZGY|1|LA|U|1040
8ZGY|1|LA|U|1041
8ZGY|1|LA|C|1042
8ZGY|1|LA|U|1043

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LB

5S ribosomal RNA; 5S rRNA

Chain LG

Large ribosomal subunit protein uL18

Chain LL

Large ribosomal subunit protein uL16