IL_8ZGY_051
3D structure
- PDB id
- 8ZGY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with P/E tRNA and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- UCUAGACAG*CCGAA
- Length
- 14 nucleotides
- Bulged bases
- 8ZGY|1|LA|A|1220
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8ZGY_051 not in the Motif Atlas
- Homologous match to IL_8GLP_082
- Geometric discrepancy: 0.5993
- The information below is about IL_8GLP_082
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_99692.4
- Basepair signature
- cWW-tSS-tSH-L-R-R-L-cWW-L-L
- Number of instances in this motif group
- 5
Unit IDs
8ZGY|1|LA|U|1217
8ZGY|1|LA|C|1218
8ZGY|1|LA|U|1219
8ZGY|1|LA|A|1220
8ZGY|1|LA|G|1221
8ZGY|1|LA|A|1222
8ZGY|1|LA|C|1223
8ZGY|1|LA|A|1224
8ZGY|1|LA|G|1225
*
8ZGY|1|LA|C|1282
8ZGY|1|LA|C|1283
8ZGY|1|LA|G|1284
8ZGY|1|LA|A|1285
8ZGY|1|LA|A|1286
Current chains
- Chain LA
- 25S rRNA (3393-MER)
Nearby chains
- Chain LU
- Large ribosomal subunit protein eL20A
- Chain Lo
- Large ribosomal subunit protein eL40A
Coloring options: