IL_8ZGY_054
3D structure
- PDB id
- 8ZGY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with P/E tRNA and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CGU*AGUG
- Length
- 7 nucleotides
- Bulged bases
- 8ZGY|1|LA|G|1428
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8ZGY_054 not in the Motif Atlas
- Homologous match to IL_8P9A_285
- Geometric discrepancy: 0.0646
- The information below is about IL_8P9A_285
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_42997.3
- Basepair signature
- cWW-L-R-cWW
- Number of instances in this motif group
- 20
Unit IDs
8ZGY|1|LA|C|1375
8ZGY|1|LA|G|1376
8ZGY|1|LA|U|1377
*
8ZGY|1|LA|A|1427
8ZGY|1|LA|G|1428
8ZGY|1|LA|U|1429
8ZGY|1|LA|G|1430
Current chains
- Chain LA
- 25S rRNA (3393-MER)
Nearby chains
- Chain LC
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LF
- Large ribosomal subunit protein uL4A
- Chain Lc
- Large ribosomal subunit protein uL15
- Chain Lg
- Large ribosomal subunit protein eL32
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