IL_8ZGY_056
3D structure
- PDB id
- 8ZGY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with P/E tRNA and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- UGACGAAG*UCGAA
- Length
- 13 nucleotides
- Bulged bases
- 8ZGY|1|LA|C|1390
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8ZGY_056 not in the Motif Atlas
- Homologous match to IL_8CRE_063
- Geometric discrepancy: 0.0578
- The information below is about IL_8CRE_063
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_70923.9
- Basepair signature
- cWW-tSS-tSH-L-tHS-tHS-cWW
- Number of instances in this motif group
- 27
Unit IDs
8ZGY|1|LA|U|1387
8ZGY|1|LA|G|1388
8ZGY|1|LA|A|1389
8ZGY|1|LA|C|1390
8ZGY|1|LA|G|1391
8ZGY|1|LA|A|1392
8ZGY|1|LA|A|1393
8ZGY|1|LA|G|1394
*
8ZGY|1|LA|U|1414
8ZGY|1|LA|C|1415
8ZGY|1|LA|G|1416
8ZGY|1|LA|A|1417
8ZGY|1|LA|A|1418
Current chains
- Chain LA
- 25S rRNA (3393-MER)
Nearby chains
- Chain LC
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LF
- Large ribosomal subunit protein uL4A
- Chain LH
- Large ribosomal subunit protein eL6B
- Chain LR
- Large ribosomal subunit protein uL22A
- Chain La
- Large ribosomal subunit protein uL24A
- Chain Lg
- Large ribosomal subunit protein eL32
Coloring options: