IL_8ZGY_086

3D structure

PDB id

8ZGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GC*GCAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZGY_086 not in the Motif Atlas

Geometric match to IL_8CRE_094

Geometric discrepancy: 0.0534

The information below is about IL_8CRE_094

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22551.4

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

9

Unit IDs

8ZGY|1|LA|G|2275
8ZGY|1|LA|C|2276
*
8ZGY|1|LA|G|2306
8ZGY|1|LA|C|2307
8ZGY|1|LA|A|2308
8ZGY|1|LA|U|2309

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain Lp

Large ribosomal subunit protein eL41A