IL_8ZGY_109
3D structure
- PDB id
- 8ZGY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with P/E tRNA and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- UA*UAAG
- Length
- 6 nucleotides
- Bulged bases
- 8ZGY|1|LA|A|2910
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8ZGY_109 not in the Motif Atlas
- Homologous match to IL_8CRE_120
- Geometric discrepancy: 0.1058
- The information below is about IL_8CRE_120
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_02555.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 9
Unit IDs
8ZGY|1|LA|U|2890
8ZGY|1|LA|A|2891
*
8ZGY|1|LA|U|2908
8ZGY|1|LA|A|2909
8ZGY|1|LA|A|2910
8ZGY|1|LA|G|2911
Current chains
- Chain LA
- 25S rRNA (3393-MER)
Nearby chains
- Chain LK
- Large ribosomal subunit protein uL6A
- Chain Lo
- Large ribosomal subunit protein eL40A
Coloring options: