3D structure

PDB id
8ZGY (explore in PDB, NAKB, or RNA 3D Hub)
Description
80S ribosome with P/E tRNA and mRNA of WNV
Experimental method
ELECTRON MICROSCOPY
Resolution
2.8 Å

Loop

Sequence
UA*UAAG
Length
6 nucleotides
Bulged bases
8ZGY|1|LA|A|2910
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8ZGY_109 not in the Motif Atlas
Homologous match to IL_8CRE_120
Geometric discrepancy: 0.1058
The information below is about IL_8CRE_120
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_02555.1
Basepair signature
cWW-L-cWW
Number of instances in this motif group
9

Unit IDs

8ZGY|1|LA|U|2890
8ZGY|1|LA|A|2891
*
8ZGY|1|LA|U|2908
8ZGY|1|LA|A|2909
8ZGY|1|LA|A|2910
8ZGY|1|LA|G|2911

Current chains

Chain LA
25S rRNA (3393-MER)

Nearby chains

Chain LK
Large ribosomal subunit protein uL6A
Chain Lo
Large ribosomal subunit protein eL40A

Coloring options:


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