IL_8ZGY_112

3D structure

PDB id

8ZGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CAAU*AGAACG

Length

10 nucleotides

Bulged bases

8ZGY|1|LA|A|3141, 8ZGY|1|LA|C|3142

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZGY_112 not in the Motif Atlas

Homologous match to IL_8P9A_342

Geometric discrepancy: 0.0464

The information below is about IL_8P9A_342

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

8ZGY|1|LA|C|3003
8ZGY|1|LA|A|3004
8ZGY|1|LA|A|3005
8ZGY|1|LA|U|3006
*
8ZGY|1|LA|A|3138
8ZGY|1|LA|G|3139
8ZGY|1|LA|A|3140
8ZGY|1|LA|A|3141
8ZGY|1|LA|C|3142
8ZGY|1|LA|G|3143

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LC

5.8S ribosomal RNA; 5.8S rRNA

Chain LE

Large ribosomal subunit protein uL3

Chain LQ

Large ribosomal subunit protein uL13A