IL_8ZGY_117

3D structure

PDB id

8ZGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CU*AUUG

Length

6 nucleotides

Bulged bases

8ZGY|1|LA|U|3077, 8ZGY|1|LA|U|3078

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZGY_117 not in the Motif Atlas

Homologous match to IL_8P9A_347

Geometric discrepancy: 0.2146

The information below is about IL_8P9A_347

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8ZGY|1|LA|C|3062
8ZGY|1|LA|U|3063
*
8ZGY|1|LA|A|3076
8ZGY|1|LA|U|3077
8ZGY|1|LA|U|3078
8ZGY|1|LA|G|3079

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LT

Large ribosomal subunit protein eL19A

Chain Lf

Large ribosomal subunit protein eL31A