IL_8ZGY_118

3D structure

PDB id

8ZGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

AUUAU*AGAAU

Length

10 nucleotides

Bulged bases

8ZGY|1|LA|A|3129

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZGY_118 not in the Motif Atlas

Homologous match to IL_8CRE_129

Geometric discrepancy: 0.0679

The information below is about IL_8CRE_129

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_38507.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

16

Unit IDs

8ZGY|1|LA|A|3102
8ZGY|1|LA|U|3103
8ZGY|1|LA|U|3104
8ZGY|1|LA|A|3105
8ZGY|1|LA|U|3106
*
8ZGY|1|LA|A|3126
8ZGY|1|LA|G|3127
8ZGY|1|LA|A|3128
8ZGY|1|LA|A|3129
8ZGY|1|LA|U|3130

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LK

Large ribosomal subunit protein uL6A

Chain LQ

Large ribosomal subunit protein uL13A

Chain Lo

Large ribosomal subunit protein eL40A